gplas is a tool to bin plasmid-predicted contigs based on sequence composition, coverage and assembly graph information. It extends the possibility of accurately binning predicted plasmid contigs into several discrete plasmid components.
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install gplas
and update with:
conda update gplas
or use the docker container:
docker pull quay.io/biocontainers/gplas:<tag>
(see gplas/tags for valid values for