recipe gpsw

GPSW is a tool for analysing Global Protein Stability Profiling data.

Homepage:

https://github.com/niekwit/gps-orfeome

Documentation:

https://gps-orfeome.readthedocs.io/

License:

MIT / MIT

Recipe:

/gpsw/meta.yaml

Links:

doi: 10.5281/zenodo.15473715

GPSW is a wrapper around a Snakemake workflow that analyses Global Protein Stability (GPS) Profiling data. GPS profiling is a powerfull genetic technique to study degron or protein stability at a massive scale in an unbiased manner.

package gpsw

(downloads) docker_gpsw

versions:

0.8.0-0,  0.7.0-0,  0.6.3-0

depends apptainer:

1.4.0

depends conda:

24.7.1

depends numpy:

2.2.6

depends pandas:

2.2.3

depends pydot:

3.0.4

depends pygithub:

2.6.1

depends pygments:

depends python:

3.12

depends snakemake-minimal:

8.25.5

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gpsw

and update with::

   mamba update gpsw

To create a new environment, run:

mamba create --name myenvname gpsw

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gpsw:<tag>

(see `gpsw/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/gpsw/README.html)