recipe grafimo

GRAFIMO, GRAph-based Finding of Indivividual Motif Occurrences

Homepage:

https://github.com/pinellolab/GRAFIMO

License:

MIT

Recipe:

/grafimo/meta.yaml

package grafimo

versions:

1.1.6-0,  1.1.4-2,  1.1.4-1,  1.1.4-0,  1.1.3-1,  1.1.3-0,  1.1.1-0,  1.0.1-0

depends colorama:

depends graphviz:

depends htslib:

depends libgcc-ng:

>=12

depends numba:

>=0.47,<1

depends numpy:

>=1.21.6,<2.0a0

depends pandas:

>=1.4.4,<2.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends statsmodels:

>=0.11

depends vg:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install grafimo

and update with::

   mamba update grafimo

To create a new environment, run:

mamba create --name myenvname grafimo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/grafimo:<tag>

(see `grafimo/tags`_ for valid values for ``<tag>``)

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