recipe graph2pro-var

meta-proteogenomic identification from mass spec and metagenomic/transcriptomic data

Homepage:

https://github.com/COL-IU/graph2pro-var

License:

GPL / GPL-3.0

Recipe:

/graph2pro-var/meta.yaml

package graph2pro-var

versions:

1.0.0-1,  1.0.0-0

depends bowtie2:

depends cd-hit:

depends dbgraph:

depends fraggenescan:

depends gawk:

depends msgf_plus:

depends python:

depends rapsearch:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install graph2pro-var

and update with::

   mamba update graph2pro-var

To create a new environment, run:

mamba create --name myenvname graph2pro-var

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/graph2pro-var:<tag>

(see `graph2pro-var/tags`_ for valid values for ``<tag>``)

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