recipe graphprot

GraphProt is a tool for modelling binding preferences of RNA-binding proteins from high-throughput experiments such as CLIP-seq and RNAcompete.

Homepage:

https://github.com/dmaticzka/graphprot

License:

MIT

Recipe:

/graphprot/meta.yaml

package graphprot

versions:

1.1.7-4,  1.1.7-2,  1.1.7-1,  1.1.7-0,  1.1.6-0

depends coreutils:

depends curl:

>=7.61.0,<8.0a0

depends gawk:

depends libstdcxx-ng:

>=4.9

depends libsvm:

>=3.21,<3.22.0a0

depends make:

depends openmp:

depends perl-getopt-long:

depends r-plyr:

depends r-prroc:

depends rnashapes:

<3

depends weblogo:

>=3

depends zlib:

>=1.2.11,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install graphprot

and update with::

   mamba update graphprot

To create a new environment, run:

mamba create --name myenvname graphprot

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/graphprot:<tag>

(see `graphprot/tags`_ for valid values for ``<tag>``)

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