recipe graphprot

GraphProt is a tool for modelling binding preferences of RNA-binding proteins from high-throughput experiments such as CLIP-seq and RNAcompete.

Homepage

https://github.com/dmaticzka/graphprot

License

MIT

Recipe

/graphprot/meta.yaml

package graphprot

Versions

1.1.7-4,  1.1.7-2,  1.1.7-1,  1.1.7-0,  1.1.6-0

Depends

• coreutils

• curl >=7.61.0,<8.0a0

• gawk

• libstdcxx-ng >=4.9

• libsvm >=3.21,<3.22.0a0

• make

• openmp

• perl-getopt-long

• r-plyr

• r-prroc

• rnashapes <3

• weblogo >=3

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install graphprot

and update with:

conda update graphprot

or use the docker container:

docker pull quay.io/biocontainers/graphprot:<tag>

(see graphprot/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/graphprot/README.html)