recipe greenhill

A de novo chromosomal-level scaffolding and phasing tool using Hi-C

Homepage:

https://github.com/ShunOuchi/GreenHill

License:

GPL / GPL-3.0

Recipe:

/greenhill/meta.yaml

package greenhill

versions:

1.1.0-1,  1.1.0-0,  1.0.0-0

depends _openmp_mutex:

>=4.5

depends bzip2:

>=1.0.8,<2.0a0

depends gzip:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends minimap2:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install greenhill

and update with::

   mamba update greenhill

To create a new environment, run:

mamba create --name myenvname greenhill

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/greenhill:<tag>

(see `greenhill/tags`_ for valid values for ``<tag>``)

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Link to this page

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