recipe grid

Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).

Homepage

https://github.com/ohlab/GRiD

License

MIT

Recipe

/grid/meta.yaml

package grid

(downloads) docker_grid

Versions

1.3-1, 1.3-0, 1.2-0, 1.1-4, 1.1-3, 1.1-2, 1.1-1, 1.1-0, 1.0.6-0

Depends bamtools

Depends bedtools

Depends blast

Depends bowtie2

Depends mosdepth

Depends parallel

Depends pathoscope

Depends r-dplyr

Depends r-getopt

Depends r-ggplot2

Depends r-gplots

Depends r-gsubfn

Depends readline

>=6.2

Depends samtools

Depends seqtk

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install grid

and update with:

conda update grid

or use the docker container:

docker pull quay.io/biocontainers/grid:<tag>

(see grid/tags for valid values for <tag>)