recipe grid

Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).

Homepage:

https://github.com/ohlab/GRiD

License:

MIT

Recipe:

/grid/meta.yaml

package grid

Versions:

1.3-3,  1.3-2,  1.3-1,  1.3-0,  1.2-0,  1.1-4,  1.1-3,  1.1-2,  1.1-1, 

1.3-3,  1.3-2,  1.3-1,  1.3-0,  1.2-0,  1.1-4,  1.1-3,  1.1-2,  1.1-1,  1.1-0,  1.0.6-0

Depends:

• bamtools

• bedtools

• blast

• bowtie2

• mosdepth

• parallel

• pathoscope

• r-dplyr

• r-getopt

• r-ggplot2

• r-gplots

• r-gsubfn

• readline >=6.2

• samtools

• seqtk

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install grid

and update with:

conda update grid

or use the docker container:

docker pull quay.io/biocontainers/grid:<tag>

(see grid/tags for valid values for <tag>)

Download stats

Link to this page

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