recipe gridss

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Homepage:

https://github.com/PapenfussLab/gridss

License:

GPL / GPL-3.0-only

Recipe:

/gridss/meta.yaml

Links:

biotools: gridss, doi: 10.1101/gr.222109.117, doi: 10.1186/s13059-021-02423-x

package gridss

(downloads) docker_gridss

Versions:
2.13.2-12.13.2-02.13.1-02.13.0-02.12.2-02.12.0-12.12.0-02.11.1-12.11.1-0

2.13.2-12.13.2-02.13.1-02.13.0-02.12.2-02.12.0-12.12.0-02.11.1-12.11.1-02.11.0-12.11.0-02.10.2-02.10.1-02.10.0-02.9.4-02.9.3-02.9.2-02.9.1-02.8.3-02.8.2-02.8.1-02.8.0-12.8.0-02.7.3-02.7.2-02.7.1-02.7.0-02.6.3-02.6.2-02.6.1-02.6.0-02.5.2-02.5.1-02.1.0-02.0.1-01.9.0-01.8.1-01.8.0-01.7.2-21.7.2-01.3.4-01.3.2-01.3.0-01.2.4-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gridss

and update with:

conda update gridss

or use the docker container:

docker pull quay.io/biocontainers/gridss:<tag>

(see gridss/tags for valid values for <tag>)

Notes

The package contains additional command line wrappers for the GRIDSS java-based utilities.

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