recipe grz-cli

Tool for validation, encryption and upload of MV submissions to GDCs.

Homepage:

https://pypi.org/project/grz-cli

License:

MIT

Recipe:

/grz-cli/meta.yaml

package grz-cli

versions:

0.1.1-0

depends boto3:

>=1.35.39,<1.36.dev0

depends click:

>=8.1.7,<8.2.dev0

depends jsonschema:

>=4.23.0,<4.24.dev0

depends platformdirs:

>=4.3.6,<4.4.dev0

depends pydantic:

>=2.9.2,<2.10.dev0

depends python:

>=3.12

depends python-crypt4gh:

>=1.7,<2.dev0

depends pyyaml:

>=6.0.2,<6.1.dev0

depends tqdm:

>=4.66.5,<4.67.dev0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install grz-cli

and update with::

   mamba update grz-cli

To create a new environment, run:

mamba create --name myenvname grz-cli

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/grz-cli:<tag>

(see `grz-cli/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/grz-cli/README.html)