recipe gsearch

gsearch is an ultra-fast and scalable microbial genome search program based on MinHash-like metrics and graph-based approximate nearest neighbor search

Homepage:

https://github.com/jean-pierreBoth/gsearch

License:

MIT

Recipe:

/gsearch/meta.yaml

Links:

doi: 10.1093/nar/gkae609

package gsearch

versions:

0.2.3-0,  0.2.2-1,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.9-0,  0.1.8-0,  0.1.7-0,  0.1.6-0, 

0.2.3-0,  0.2.2-1,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.9-0,  0.1.8-0,  0.1.7-0,  0.1.6-0,  0.1.5-0,  0.1.4-0,  0.1.2-6,  0.1.2-5,  0.1.2-0,  0.0.12-0

depends libgcc:

>=13

depends libstdcxx:

>=13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install gsearch

and update with::

   mamba update gsearch

To create a new environment, run:

mamba create --name myenvname gsearch

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/gsearch:<tag>

(see `gsearch/tags`_ for valid values for ``<tag>``)

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