recipe gtotree

GToTree is a user-friendly workflow for phylogenomics.

Homepage:

https://github.com/AstrobioMike/GToTree/wiki/what-is-gtotree%3F

Documentation:

https://github.com/AstrobioMike/GToTree/wiki/

Developer docs:

https://github.com/AstrobioMike/GToTree/

License:

GPL / GPL3

Recipe:

/gtotree/meta.yaml

# GToTree - a user-friendly workflow for phylogenomics

GToTree is a user-friendly workflow for phylogenomics intended to give more researchers the capability to create phylogenomic trees. The open-access Bioinformatics Journal publication is available here (https://doi.org/10.1093/bioinformatics/btz188), and documentation and examples can be found at the wiki here (https://github.com/AstrobioMike/GToTree/wiki).

Installation should be performed as:

``` conda create -n gtotree -c astrobiomike -c conda-forge -c bioconda -c defaults gtotree ```

package gtotree

Versions:

1.8.1-0,  1.7.10-0,  1.7.08-0,  1.7.07-0,  1.7.06-0,  1.7.05-1

Depends:

• bc

• biopython

• coreutils 9.1.*

• curl

• dos2unix

• entrez-direct

• fasttree

• file

• gzip

• hmmer

• iqtree >=2.2.2

• kofamscan 1.3.0.*

• muscle 5.*

• pandas

• parallel

• prodigal

• python

• sed

• taxonkit

• trimal

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install gtotree

and update with:

conda update gtotree

or use the docker container:

docker pull quay.io/biocontainers/gtotree:<tag>

(see gtotree/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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