recipe guidescan

Tools to create and interface genome-wide CRISPR guideRNA databases

Homepage

https://bitbucket.org/arp2012/guidescan_public

License

Unknown

Recipe

/guidescan/meta.yaml

package guidescan

(downloads) docker_guidescan

Versions

1.2-1, 1.2-0, 1.0-2, 1.0-1, 1.0-0

Depends biopython

>=1.66

Depends bx-python

0.7.3

Depends coreutils

Depends numpy

Depends openblas

>=0.2.20,<0.2.21.0a0

Depends pandas

Depends psutil

Depends pyfaidx

0.4.7.1

Depends pysam

0.8.3

Depends python

>=2.7,<2.8.0a0

Depends python-dateutil

>=2.5.0

Depends rename

Depends samtools

1.3.1

Depends scikit-learn

>=0.16.1

Depends xlwt

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install guidescan

and update with:

conda update guidescan

or use the docker container:

docker pull quay.io/biocontainers/guidescan:<tag>

(see guidescan/tags for valid values for <tag>)