recipe hairsplitter

Recovers collapsed haplotypes from a draft assembly and long reads

Homepage:

https://github.com/RolandFaure/HairSplitter

License:

GPL-3.0-or-later

Recipe:

/hairsplitter/meta.yaml

package hairsplitter

versions:

1.9.10-1,  1.9.10-0,  1.9.9-0,  1.9.5-0,  1.8.0-0,  1.7.15-0,  1.7.14-0,  1.7.13-0

depends _openmp_mutex:

>=4.5

depends libgcc-ng:

>=12

depends libgomp:

depends libstdcxx-ng:

>=12

depends minigraph:

>=0.20

depends minimap2:

depends numpy:

depends python:

depends racon:

depends raven-assembler:

depends samtools:

>=1.16

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hairsplitter

and update with::

   mamba update hairsplitter

To create a new environment, run:

mamba create --name myenvname hairsplitter

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hairsplitter:<tag>

(see `hairsplitter/tags`_ for valid values for ``<tag>``)

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Link to this page

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