recipe haploflow

Strain-aware viral genome assembler for short read sequence data

Homepage:

https://github.com/hzi-bifo/Haploflow

License:

Apache-2.0 AND MIT

Recipe:

/haploflow/meta.yaml

Haploflow is a strain-aware viral genome assembler for short read sequence data. It uses a flow algorithm on a deBruijn graph data structure to resolve viral strains. Haploflow is still actively under development and written entirely in C++.

package haploflow

(downloads) docker_haploflow

Versions:

1.0-11.0-00.1-10.1-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install haploflow

and update with:

conda update haploflow

or use the docker container:

docker pull quay.io/biocontainers/haploflow:<tag>

(see haploflow/tags for valid values for <tag>)

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