recipe haptools

Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

Homepage:

https://github.com/cast-genomics/haptools

Documentation:

https://haptools.readthedocs.io

License:

MIT / MIT

Recipe:

/haptools/meta.yaml

Links:

doi: 10.1093/bioinformatics/btad104, biotools: haptools

package haptools

versions:

0.4.2-0,  0.4.0-0,  0.3.0-0,  0.2.1-0,  0.2.0-0,  0.1.3-0,  0.1.2-0,  0.0.3-0,  0.0.2-0

depends click:

>=8.0.3

depends cyvcf2:

>=0.30.14

depends matplotlib-base:

>=3.5.1

depends numpy:

>=1.20.0

depends pgenlib:

>=0.90.1

depends pysam:

>=0.19.0

depends python:

>=3.7,<4.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install haptools

and update with::

   mamba update haptools

To create a new environment, run:

mamba create --name myenvname haptools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/haptools:<tag>

(see `haptools/tags`_ for valid values for ``<tag>``)

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