recipe harpy

Process raw haplotagging data, from raw sequences to phased haplotypes.

Homepage:

https://github.com/pdimens/harpy/

Documentation:

https://pdimens.github.io/harpy/

Developer docs:

https://github.com/pdimens/harpy

License:

The MIT License (MIT)

Recipe:

/harpy/meta.yaml

package harpy

Versions:

0.1.1-2,  0.1.1-1,  0.1.1-0

Depends:

• bcftools

• bioconductor-complexheatmap

• bwa

• datamash

• fastp

• hapcut2

• leviathan

• libzlib

• llvm-openmp

• multiqc

• python >=3.7

• r-base >=4

• r-circlize

• r-dplyr

• r-dt

• r-ggplot2

• r-knitr

• r-magrittr

• r-plotly

• r-rmarkdown

• r-stitch

• r-tidyr

• r-viridislite

• rich-click

• sambamba

• samtools

• seqfu

• snakemake >=7

• tabix

• zlib

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install harpy

and update with:

conda update harpy

or use the docker container:

docker pull quay.io/biocontainers/harpy:<tag>

(see harpy/tags for valid values for <tag>)

Download stats

Link to this page

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