recipe haystack_bio

Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

Homepage:

https://github.com/pinellolab/haystack_bio

License:

GPLv3

Recipe:

/haystack_bio/meta.yaml

package haystack_bio

Versions:

0.5.5-1,  0.5.5-0,  0.5.4-1,  0.5.3-1,  0.5.3-0,  0.5.2-8,  0.5.2-7,  0.5.2-6,  0.5.2-5, 

0.5.5-1,  0.5.5-0,  0.5.4-1,  0.5.3-1,  0.5.3-0,  0.5.2-8,  0.5.2-7,  0.5.2-6,  0.5.2-5,  0.5.2-4,  0.5.2-3,  0.5.2-2,  0.5.2-1,  0.5.2-0,  v0.5.0-0

Depends:

• bedtools

• bx-python

• jinja2

• matplotlib

• meme 4.11.2.*

• numpy 1.15.*

• openjdk

• pandas

• python >=2.7,<3.0a0

• sambamba

• scipy

• tqdm

• ucsc-bedgraphtobigwig

• ucsc-bigwigaverageoverbed

• weblogo

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install haystack_bio

and update with:

conda update haystack_bio

or use the docker container:

docker pull quay.io/biocontainers/haystack_bio:<tag>

(see haystack_bio/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/haystack_bio/README.html)