recipe helitronscanner

HelitronScanner uncovers a large overlooked cache of Helitron transposons in many genomes

Homepage:

https://sourceforge.net/projects/helitronscanner

License:

GPL-3.0-or-later

Recipe:

/helitronscanner/meta.yaml

package helitronscanner

(downloads) docker_helitronscanner

versions:

1.0-0

depends openjdk:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install helitronscanner

and update with::

   mamba update helitronscanner

To create a new environment, run:

mamba create --name myenvname helitronscanner

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/helitronscanner:<tag>

(see `helitronscanner/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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