recipe hera

hera is a bioinformatics tool that helps analyze RNA-seq data, providing base-to-base alignment BAM files, transcript abundance estimation, and fusion gene detection.

Homepage:

https://github.com/bioturing/hera

License:

MIT

Recipe:

/hera/meta.yaml

package hera

(downloads) docker_hera

versions:
1.1-10,  1.1-9,  1.1-8,  1.1-7,  1.1-6,  1.1-5,  1.1-4,  1.1-3,  1.1-2, 

1.1-10,  1.1-9,  1.1-8,  1.1-7,  1.1-6,  1.1-5,  1.1-4,  1.1-3,  1.1-2,  1.1-1,  1.1-0,  1.0.1-0,  1.0-0

depends bzip2:

>=1.0.8,<2.0a0

depends hdf5:

>=1.12.2,<1.12.3.0a0

depends htslib:

>=1.17,<1.22.0a0

depends libdivsufsort:

>=2.0.2,<2.1.0a0

depends libgcc-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends python:

depends xz:

>=5.2.6,<6.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hera

and update with::

   mamba update hera

To create a new environment, run:

mamba create --name myenvname hera

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hera:<tag>

(see `hera/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hera/README.html)