recipe hhsuite

HH-suite3 for fast remote homology detection and deep protein annotation

Homepage:

https://github.com/soedinglab/hh-suite

Documentation:

https://github.com/soedinglab/hh-suite/wiki

License:

GPLv3

Recipe:

/hhsuite/meta.yaml

Links:

doi: 10.1186/s12859-019-3019-7, biotools: hh-suite

package hhsuite

versions:

3.3.0-13,  3.3.0-12,  3.3.0-11,  3.3.0-10,  3.3.0-9,  3.3.0-8,  3.3.0-6,  3.3.0-5,  3.3.0-4, 

3.3.0-13,  3.3.0-12,  3.3.0-11,  3.3.0-10,  3.3.0-9,  3.3.0-8,  3.3.0-6,  3.3.0-5,  3.3.0-4,  3.3.0-3,  3.3.0-2,  3.3.0-1,  3.3.0-0,  3.2.0-2,  3.2.0-1,  3.2.0-0,  v3.2.0-0

depends _openmp_mutex:

>=4.5

depends libgcc:

>=12

depends libstdcxx:

>=12

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hhsuite

and update with::

   mamba update hhsuite

To create a new environment, run:

mamba create --name myenvname hhsuite

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hhsuite:<tag>

(see `hhsuite/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hhsuite/README.html)