recipe hi-corrector

Remove biases from chromatin contact matrices generated by genome-wide proximity ligation assays, e.g. Hi-C and its variant TCC

Homepage:

https://github.com/jasminezhoulab/Hi-Corrector

License:

BSD / BSD-3-Clause

Recipe:

/hi-corrector/meta.yaml

package hi-corrector

(downloads) docker_hi-corrector

versions:

1.2-4,  1.2-3,  1.2-2,  1.2-1,  1.2-0

depends libgcc:

>=13

depends openmpi:

>=4.1.6,<5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hi-corrector

and update with::

   mamba update hi-corrector

To create a new environment, run:

mamba create --name myenvname hi-corrector

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hi-corrector:<tag>

(see `hi-corrector/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hi-corrector/README.html)