-
recipe
hicexplorer
Set of programs to process, analyze and visualize Hi-C and capture Hi-C data
- Homepage
- License
GPL3
- Recipe
- Links
doi: 10.1093/nar/gky504, doi: 10.1093/nar/gkaa220, usegalaxy-eu: hicexplorer_hicplotviewpoint
-
package
hicexplorer
¶ -
- Versions
3.6-0
,3.5.3-0
,3.5.2-0
,3.5.1-0
,3.5-0
,3.4.3-1
,3.4.3-0
,3.4.2-0
,3.4.1-1
,3.6-0
,3.5.3-0
,3.5.2-0
,3.5.1-0
,3.5-0
,3.4.3-1
,3.4.3-0
,3.4.2-0
,3.4.1-1
,3.4.1-0
,3.4-0
,3.3.1-0
,3.3-0
,3.2-0
,3.1-0
,3.0.2-0
,3.0.1-0
,2.2.3-0
,2.2.2-0
,2.2.1-0
,2.2-1
,2.2-0
,2.2beta-0
,2.1.4-3
,2.1.4-2
,2.1.3-0
,2.1.2-0
,2.1.1-1
,2.1.1-0
,2.1-0
,2.1alpha1-0
,2.0-1
,2.0-0
,1.8.1-0
,1.8-2
,1.8-1
,1.8-0
,1.7.2-0
,1.7.1-0
,1.6.1-0
,1.6-0
,1.4-0
,1.3-0
,1.2-0
,1.1a-0
,0.1-0
- Depends
biopython
<1.77
cooler
>=0.8.10
fit_nbinom
>=1.1
hic2cool
>=0.8.3
hicmatrix
>=15
hyperopt
>=0.2.4
ipykernel
>=5.3.0
krbalancing
>=0.0.5
matplotlib-base
>=3.1.*
numpy
>=1.19
pandas
>=1.1.*
pybedtools
>=0.8
pygenometracks
>=3.5
python
>=3.6
python-graphviz
>=0.14
scikit-learn
>=0.23.2
scipy
>=1.5
tqdm
>=4.50
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install hicexplorer
and update with:
conda update hicexplorer
or use the docker container:
docker pull quay.io/biocontainers/hicexplorer:<tag>
(see hicexplorer/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/hicexplorer/README.html)