-
recipe
hicexplorer¶ Set of programs to process, analyze and visualize Hi-C data
- Homepage
- License
GPL3
- Recipe
- Links
doi: 10.1093/nar/gky504
-
package
hicexplorer¶ 
- Versions
3.0.1-0, 2.2.3-0, 2.2.2-0, 2.2.1-0, 2.2-1, 2.2-0, 2.2beta-0, 2.1.4-3, 2.1.4-2, 2.1.3-0, 2.1.2-0, 2.1.1-1, 2.1.1-0, 2.1-0, 2.1alpha1-0, 2.0-1, 2.0-0, 1.8.1-0, 1.8-2, 1.8-1, 1.8-0, 1.7.2-0, 1.7.1-0, 1.6.1-0, 1.6-0, 1.4-0, 1.3-0, 1.2-0, 1.1a-0, 0.1-0
- Depends biopython
- Depends configparser
- Depends cooler
>=0.8.2
- Depends cooler
>=0.8.3
- Depends fit_nbinom
>=1.0
- Depends future
- Depends hic2cool
>=0.5
- Depends hicmatrix
>=9
- Depends intervaltree
- Depends jinja2
- Depends krbalancing
>=0.0.4
- Depends matplotlib
>=3.0
- Depends numpy
>=1.15
- Depends pandas
- Depends pybigwig
- Depends pygenometracks
>=2.1
- Depends pysam
- Depends pytables
- Depends python
>=3.5
- Depends scipy
- Depends six
- Depends unidecode
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install hicexplorer
and update with:
conda update hicexplorer
or use the docker container:
docker pull quay.io/biocontainers/hicexplorer:<tag>
(see hicexplorer/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/hicexplorer/README.html)