recipe hicexplorer

Set of programs to process, analyze and visualize Hi-C and capture Hi-C data

Homepage

https://github.com/deeptools/HiCExplorer

License

GPL3

Recipe

/hicexplorer/meta.yaml

Links

doi: 10.1093/nar/gky504

package hicexplorer

Versions

3.2-0, 3.1-0, 3.0.2-0, 3.0.1-0, 2.2.3-0, 2.2.2-0, 2.2.1-0, 2.2-1, 2.2-0, 2.2beta-0, 2.1.4-3, 2.1.4-2, 2.1.3-0, 2.1.2-0, 2.1.1-1, 2.1.1-0, 2.1-0, 2.1alpha1-0, 2.0-1, 2.0-0, 1.8.1-0, 1.8-2, 1.8-1, 1.8-0, 1.7.2-0, 1.7.1-0, 1.6.1-0, 1.6-0, 1.4-0, 1.3-0, 1.2-0, 1.1a-0, 0.1-0

Depends

• biopython

• cooler >=0.8.5

• fit_nbinom >=1.1

• future

• hic2cool >=0.7

• hicmatrix >=11

• intervaltree

• jinja2

• krbalancing >=0.0.5

• matplotlib 3.1.*

• numpy >=1.17

• pandas

• psutil

• pybedtools >=0.8

• pybigwig

• pygenometracks >=3.0

• pysam

• pytables

• python >=3.5

• scipy >=1.3

• unidecode

Required By

• hicbrowser

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hicexplorer

and update with:

conda update hicexplorer

or use the docker container:

docker pull quay.io/biocontainers/hicexplorer:<tag>

(see hicexplorer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hicexplorer/README.html)