recipe hicmatrix

Library to manage Hi-C matrices for HiCExplorer and pyGenomeTracks

Homepage:

https://github.com/deeptools/HiCMatrix

License:

GPL3 / GPL-3.0-or-later

Recipe:

/hicmatrix/meta.yaml

package hicmatrix

versions:

17.2-0,  17.1-1,  17.1-0,  17-0,  16-0,  15-0,  14-0,  13-0,  12-0, 

17.2-0,  17.1-1,  17.1-0,  17-0,  16-0,  15-0,  14-0,  13-0,  12-0,  11-0,  10-1,  10-0,  9-0,  8-0,  7-0,  6-1,  6-0,  5-0,  4-0,  3-0,  2.2-1,  2.2-0

depends cooler:

>=0.8.10

depends intervaltree:

>=3.0.*

depends numpy:

>=1.20

depends pandas:

>=0.25.*

depends pytables:

>=3.5.*

depends python:

>=3.7

depends scipy:

>=1.2.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hicmatrix

and update with::

   mamba update hicmatrix

To create a new environment, run:

mamba create --name myenvname hicmatrix

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hicmatrix:<tag>

(see `hicmatrix/tags`_ for valid values for ``<tag>``)

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