recipe hicmatrix

Library to manage Hi-C matrices for HiCExplorer and pyGenomeTracks

Homepage

https://github.com/deeptools/HiCMatrix

License

GPL3

Recipe

/hicmatrix/meta.yaml

package hicmatrix

Versions

15-0,  14-0,  13-0,  12-0,  11-0,  10-1,  10-0,  9-0,  8-0, 

15-0,  14-0,  13-0,  12-0,  11-0,  10-1,  10-0,  9-0,  8-0,  7-0,  6-1,  6-0,  5-0,  4-0,  3-0,  2.2-1,  2.2-0

Depends

• cooler >=0.8.10

• intervaltree

• numpy >=1.16

• pandas

• pytables

• python >=3

• scipy

Required By

• schicexplorer

• pygenometracks

• hicexplorer

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hicmatrix

and update with:

conda update hicmatrix

or use the docker container:

docker pull quay.io/biocontainers/hicmatrix:<tag>

(see hicmatrix/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hicmatrix/README.html)