recipe hicstuff

General purpose stuff to generate and handle Hi-C data in its simplest form.

Homepage:

https://github.com/koszullab/hicstuff

Documentation:

https://hicstuff.readthedocs.io/en/latest/

License:

GPL3 / GPL-3.0-only

Recipe:

/hicstuff/meta.yaml

package hicstuff

Versions:

3.1.5-1,  3.1.5-0,  3.1.4-0,  3.1.3-0,  3.1.2-0,  3.1.1-0,  3.1.0-0,  3.0.3-0,  3.0.2-0, 

3.1.5-1,  3.1.5-0,  3.1.4-0,  3.1.3-0,  3.1.2-0,  3.1.1-0,  3.1.0-0,  3.0.3-0,  3.0.2-0,  2.3.2-0,  2.3.1-0,  2.3.0-2,  2.3.0-1,  2.3.0-0

Depends:

• biopython

• bowtie2

• coreutils

• docopt

• matplotlib-base

• minimap2

• numpy

• pandas

• pyfastx

• pysam

• python >=3.6,<3.8

• requests

• samtools

• scikit-learn

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hicstuff

and update with:

conda update hicstuff

or use the docker container:

docker pull quay.io/biocontainers/hicstuff:<tag>

(see hicstuff/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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