- recipe hicstuff
General purpose stuff to generate and handle Hi-C data in its simplest form.
- Homepage:
- Documentation:
- License:
GPL3 / GPL-3.0-only
- Recipe:
- package hicstuff¶
- versions:
3.2.1-0,3.2.0-0,3.1.7-0,3.1.6-0,3.1.5-2,3.1.5-1,3.1.5-0,3.1.4-0,3.1.3-0,3.2.1-0,3.2.0-0,3.1.7-0,3.1.6-0,3.1.5-2,3.1.5-1,3.1.5-0,3.1.4-0,3.1.3-0,3.1.2-0,3.1.1-0,3.1.0-0,3.0.3-0,3.0.2-0,2.3.2-0,2.3.1-0,2.3.0-2,2.3.0-1,2.3.0-0- depends biopython:
- depends bowtie2:
- depends cooler:
- depends coreutils:
- depends docopt:
- depends matplotlib-base:
- depends minimap2:
- depends numpy:
- depends pandas:
- depends pyfastx:
- depends pysam:
- depends python:
>=3.7- depends requests:
- depends samtools:
- depends scikit-learn:
- depends scipy:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install hicstuff and update with:: mamba update hicstuff
To create a new environment, run:
mamba create --name myenvname hicstuff
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/hicstuff:<tag> (see `hicstuff/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/hicstuff/README.html)
