- recipe hictkpy
Python bindings for hictk: read and write .cool and .hic files directly from Python
- Homepage:
- Documentation:
- License:
MIT
- Recipe:
- Links:
biotools: hictkpy, doi: 10.5281/zenodo.8220300
- package hictkpy¶
- versions:
1.0.0-0,0.0.5-2,0.0.5-1,0.0.5-0,0.0.4-0,0.0.3-0,0.0.2-0,0.0.1-0- depends hdf5:
>=1.14,<2.0a0- depends hdf5:
>=1.14.4,<1.14.5.0a0- depends libarrow:
>=18.0.0,<18.1.0a0- depends libdeflate:
>=1,<2.0a0- depends libdeflate:
>=1.22,<1.23.0a0- depends libgcc:
- depends libgcc-ng:
>=13- depends libstdcxx:
- depends libstdcxx-ng:
>=13- depends numpy:
>=1.22.4,<2.0a0- depends pandas:
- depends pyarrow:
- depends python:
>=3.10,<3.11.0a0- depends python_abi:
3.10.* *_cp310- depends scipy:
- depends zstd:
>=1.5,<2.0a0- depends zstd:
>=1.5.6,<1.6.0a0- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install hictkpy and update with:: mamba update hictkpy
To create a new environment, run:
mamba create --name myenvname hictkpy
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/hictkpy:<tag> (see `hictkpy/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/hictkpy/README.html)
