recipe hiddendomains

hiddenDomains is a suite of programs used to identify significant enrichment of ChIP-seq reads that span large domains.

Homepage:

http://hiddendomains.sourceforge.net/

License:

GPL / GNU GPL

Recipe:

/hiddendomains/meta.yaml

package hiddendomains

(downloads) docker_hiddendomains

versions:

3.1-43.1-33.1-23.1-13.1-03.0-0

depends bedtools:

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends r-base:

>=4.2,<4.3.0a0

depends r-depmixs4:

depends r-hiddenmarkov:

depends samtools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hiddendomains

and update with::

   mamba update hiddendomains

To create a new environment, run:

mamba create --name myenvname hiddendomains

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hiddendomains:<tag>

(see `hiddendomains/tags`_ for valid values for ``<tag>``)

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