recipe hifive

Python library for normalizing and analyzing HiC and 5C data

Homepage:

https://github.com/bxlab/hifive

License:

MIT / MIT

Recipe:

/hifive/meta.yaml

package hifive

versions:

1.5.7-4,  1.5.7-3,  1.5.7-2,  1.5.7-1,  1.5.7-0,  1.5.6-2,  1.5.6-0,  1.5.3-0,  1.5.1-0, 

1.5.7-4,  1.5.7-3,  1.5.7-2,  1.5.7-1,  1.5.7-0,  1.5.6-2,  1.5.6-0,  1.5.3-0,  1.5.1-0,  1.4.0-0,  1.3.1-0,  1.3.0-0,  1.2.1-0

depends h5py:

depends libgcc-ng:

>=10.3.0

depends libstdcxx-ng:

>=10.3.0

depends mpi4py:

depends numpy:

depends pillow:

depends pysam:

depends python:

>=2.7,<2.8.0a0

depends python_abi:

2.7.* *_cp27mu

depends pyx:

0.12.1

depends scipy:

depends setuptools_cython:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hifive

and update with::

   mamba update hifive

To create a new environment, run:

mamba create --name myenvname hifive

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hifive:<tag>

(see `hifive/tags`_ for valid values for ``<tag>``)

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Link to this page

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