recipe hilive2

Tool for real-time read alignment of Illumina sequencing data

Homepage:

https://gitlab.com/rki_bioinformatics/HiLive2

License:

BSD / BSD-3-Clause

Recipe:

/hilive2/meta.yaml

package hilive2

versions:

2.0-3,  2.0-2,  2.0-1,  2.0-0,  2.0a-2,  2.0a-1,  2.0a-0

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends lz4-c:

>=1.9.3,<1.10.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hilive2

and update with::

   mamba update hilive2

To create a new environment, run:

mamba create --name myenvname hilive2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hilive2:<tag>

(see `hilive2/tags`_ for valid values for ``<tag>``)

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