- recipe hint
HiNT is a computational method for detecting copy number variations and translocations from Hi-C data
- Homepage:
- License:
MIT
- Recipe:
- package hint¶
- versions:
2.2.8-1,2.2.8-0,2.2.7-1,2.2.7-0,2.2.1-0,2.1.9-1,2.1.9-0,2.1.7-0,2.0.1-0- depends argparse:
>=1.1- depends bwa:
>=0.7.16- depends cooler:
0.8.3- depends h5py:
>=2.8.0- depends htslib:
>=1.10- depends multiprocess:
>=0.70.5- depends numpy:
>=1.16.1- depends openjdk:
>=8- depends pairix:
>=0.3.6- depends pairtools:
>=0.2.2- depends pandas:
>=0.23.0- depends perl:
>=5- depends pytabix:
- depends python:
>=3.5- depends r:
>=3.4- depends r-base:
- depends r-cairo:
- depends r-doparallel:
- depends r-foreach:
- depends r-mgcv:
- depends r-strucchange:
- depends samtools:
>=1.10- depends scikit-learn:
>=0.19.1- depends scipy:
>=1.0.1- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install hint and update with:: mamba update hint
To create a new environment, run:
mamba create --name myenvname hint
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/hint:<tag> (see `hint/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/hint/README.html)
