recipe hint

HiNT is a computational method for detecting copy number variations and translocations from Hi-C data

Homepage

https://github.com/parklab/HiNT

License

MIT

Recipe

/hint/meta.yaml

package hint

Versions

2.2.8-1,  2.2.8-0,  2.2.7-1,  2.2.7-0,  2.2.1-0,  2.1.9-1,  2.1.9-0,  2.1.7-0,  2.0.1-0

Depends

• argparse >=1.1

• bwa >=0.7.16

• cooler 0.8.3

• h5py >=2.8.0

• htslib >=1.10

• multiprocess >=0.70.5

• numpy >=1.16.1

• openjdk >=8

• pairix >=0.3.6

• pairtools >=0.2.2

• pandas >=0.23.0

• perl >=5

• pytabix

• python >=3.5

• r >=3.4

• r-base

• r-cairo

• r-doparallel

• r-foreach

• r-mgcv

• r-strucchange

• samtools >=1.10

• scikit-learn >=0.19.1

• scipy >=1.0.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hint

and update with:

conda update hint

or use the docker container:

docker pull quay.io/biocontainers/hint:<tag>

(see hint/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hint/README.html)