- recipe hitea
computational tool to identify trasposable element insertions using Hi-C data
- Homepage:
- License:
MIT / MIT
- Recipe:
- package hitea¶
- versions:
0.1.5-1,0.1.5-0,0.1.4-0- depends bedtools:
2.27.1- depends bioconductor-enrichedheatmap:
>=1.16.0- depends bioconductor-genomicranges:
>=1.38.0- depends bwa:
>=0.7.17- depends pairtools:
0.3.0.*- depends pandoc:
- depends parallel:
- depends perl:
>=5.24- depends python:
- depends r-base:
>=3.5.0- depends r-circlize:
>=0.4.8- depends r-data.table:
>=1.12.8- depends r-dt:
>=0.13- depends r-ggplot2:
>=3.3.0- depends r-kableextra:
- depends r-kernsmooth:
>=2.23_17- depends r-knitr:
>=1.28- depends r-mass:
>=7.3- depends r-rcolorbrewer:
>=1.1- depends r-rmarkdown:
>=2.1- depends r-xtable:
>=1.8- depends samtools:
>=1.10- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install hitea and update with:: mamba update hitea
To create a new environment, run:
mamba create --name myenvname hitea
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/hitea:<tag> (see `hitea/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/hitea/README.html)
