recipe hitea

computational tool to identify trasposable element insertions using Hi-C data

Homepage:

https://github.com/parklab/HiTea

License:

MIT / MIT

Recipe:

/hitea/meta.yaml

package hitea

Versions:

0.1.5-1,  0.1.5-0,  0.1.4-0

Depends:

• bedtools 2.27.1

• bioconductor-enrichedheatmap >=1.16.0

• bioconductor-genomicranges >=1.38.0

• bwa >=0.7.17

• pairtools 0.3.0.*

• pandoc

• parallel

• perl >=5.24

• python

• r-base >=3.5.0

• r-circlize >=0.4.8

• r-data.table >=1.12.8

• r-dt >=0.13

• r-ggplot2 >=3.3.0

• r-kableextra

• r-kernsmooth >=2.23_17

• r-knitr >=1.28

• r-mass >=7.3

• r-rcolorbrewer >=1.1

• r-rmarkdown >=2.1

• r-xtable >=1.8

• samtools >=1.10

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hitea

and update with:

conda update hitea

or use the docker container:

docker pull quay.io/biocontainers/hitea:<tag>

(see hitea/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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