recipe hla-asm

find HLA gene exon coordinates in long read-based assemblies and carry out HLA typing at G group resolution

Homepage:

https://github.com/DiltheyLab/HLA-LA/blob/master/HLA-ASM.md

License:

GPL

Recipe:

/hla-asm/meta.yaml

Links:

biotools: hla-asm

package hla-asm

Versions:

1.0.1-0

Depends:

• bwa

• mummer

• perl >=5.32.1,<6.0a0 *_perl5

• perl-bio-db-hts

• perl-bioperl

• perl-list-moreutils

• perl-text-levenshteinxs

• samtools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hla-asm

and update with:

conda update hla-asm

or use the docker container:

docker pull quay.io/biocontainers/hla-asm:<tag>

(see hla-asm/tags for valid values for <tag>)

Download stats

Link to this page

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