recipe hla-la/1.0

HLA typing from short and long reads

Homepage

https://github.com/DiltheyLab/HLA-LA

License

GPL

Recipe

/hla-la/1.0/meta.yaml

Links

biotools: hla-la

package hla-la

(downloads) docker_hla-la

Versions

1.0.1-3, 1.0-2, 1.0-1, 1.0-0

Depends boost-cpp

>=1.68.0,<1.68.1.0a0

Depends bwa

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends mummer

Depends perl-bio-db-hts

Depends perl-bio-featureio

Depends perl-bioperl

Depends perl-bioperl-core

Depends perl-list-moreutils

Depends perl-text-levenshtein

Depends picard

Depends samtools

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hla-la

and update with:

conda update hla-la

or use the docker container:

docker pull quay.io/biocontainers/hla-la:<tag>

(see hla-la/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hla-la/README.html)