recipe hla-la

HLA typing from short and long reads

Homepage:

https://github.com/DiltheyLab/HLA-LA

License:

GPL

Recipe:

/hla-la/meta.yaml

Links:

biotools: hla-la

package hla-la

Versions:

1.0.3-1,  1.0.3-0,  1.0.1-5,  1.0.1-4,  1.0.1-3,  1.0-2,  1.0-1,  1.0-0

Depends:

• bamtools >=2.5.1,<2.5.2.0a0

• boost-cpp >=1.74.0,<1.74.1.0a0

• bwa 0.7.12

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• mummer

• perl-bio-db-hts

• perl-bio-featureio

• perl-bioperl

• perl-bioperl-core 1.7.8.*

• perl-list-moreutils

• perl-text-levenshtein

• picard

• r-base 4.*

• samtools >=1.10

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hla-la

and update with:

conda update hla-la

or use the docker container:

docker pull quay.io/biocontainers/hla-la:<tag>

(see hla-la/tags for valid values for <tag>)

Download stats

Link to this page

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