recipe hla-la/1.0

HLA typing from short and long reads

Homepage

https://github.com/DiltheyLab/HLA-LA

License

GPL

Recipe

/hla-la/1.0/meta.yaml

Links

biotools: hla-la

package hla-la

Versions

1.0.1-4,  1.0.1-3,  1.0-2,  1.0-1,  1.0-0

Depends

• bamtools >=2.5.1,<2.5.2.0a0

• boost-cpp >=1.70.0,<1.70.1.0a0

• bwa

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• mummer

• perl-bio-db-hts

• perl-bio-featureio

• perl-bioperl

• perl-bioperl-core

• perl-list-moreutils

• perl-text-levenshtein

• picard

• samtools

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hla-la

and update with:

conda update hla-la

or use the docker container:

docker pull quay.io/biocontainers/hla-la:<tag>

(see hla-la/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hla-la/README.html)