recipe hlaprofiler

HLAProfiler uses k-mer profiles to predict HLA types from paired-end RNA-seq data.

Homepage:

https://github.com/ExpressionAnalysis/HLAProfiler

License:

Custom non-commercial license

Recipe:

/hlaprofiler/meta.yaml

package hlaprofiler

(downloads) docker_hlaprofiler

versions:

1.0.5-3,  1.0.5-2,  1.0.5-1,  1.0.5-0,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0

depends kraken-ea:

depends perl-base:

depends perl-class-load:

depends perl-file-compare:

depends perl-file-slurp:

depends perl-parallel-forkmanager:

depends perl-statistics-basic:

depends perl-test-trap:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hlaprofiler

and update with::

   mamba update hlaprofiler

To create a new environment, run:

mamba create --name myenvname hlaprofiler

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hlaprofiler:<tag>

(see `hlaprofiler/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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