recipe hmftools-linx

Linx is an annotation, interpretation and visualisation tool for structural variants

Homepage:

https://github.com/hartwigmedical/hmftools/tree/master/linx

License:

GPL / GPL-3.0-only

Recipe:

/hmftools-linx/meta.yaml

package hmftools-linx

Versions:

1.23.6-0,  1.22.1-0,  1.22-0,  1.21-0,  1.20-0,  1.19-0,  1.18-0,  1.17-0,  1.16-0, 

1.23.6-0,  1.22.1-0,  1.22-0,  1.21-0,  1.20-0,  1.19-0,  1.18-0,  1.17-0,  1.16-0,  1.15-0,  1.14-1,  1.14-0,  1.13-0,  1.12-0,  1.11-0,  1.10-1,  1.10-0,  1.7-0,  1.6-0,  1.5-0,  1.4-0

Depends:

• bioconductor-gviz

• circos >=0.69.6

• openjdk >=8

• r-cowplot

• r-dplyr

• r-ggplot2

• r-magick

• r-tidyr

• xorg-libxtst

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hmftools-linx

and update with:

conda update hmftools-linx

or use the docker container:

docker pull quay.io/biocontainers/hmftools-linx:<tag>

(see hmftools-linx/tags for valid values for <tag>)

Download stats

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