recipe hmftools-orange

ORANGE summarizes the key outputs from all algorithms in the Hartwig suite.

Homepage:

https://github.com/hartwigmedical/hmftools/blob/master/orange/README.md

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/hmftools-orange/meta.yaml

package hmftools-orange

(downloads) docker_hmftools-orange

versions:
3.7.1_beta-3,  3.7.1_beta-2,  3.7.1_beta-1,  3.7.1_beta-0,  3.7.0-0,  3.6.0-0,  3.5.1-0,  3.5.0-0,  3.4.0-0, 

3.7.1_beta-3,  3.7.1_beta-2,  3.7.1_beta-1,  3.7.1_beta-0,  3.7.0-0,  3.6.0-0,  3.5.1-0,  3.5.0-0,  3.4.0-0,  3.3.1-0,  3.3.0-0,  3.0.0-0,  2.7.1-0,  1.10.2-0

depends openjdk:

>=8,<=21

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hmftools-orange

and update with::

   mamba update hmftools-orange

To create a new environment, run:

mamba create --name myenvname hmftools-orange

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hmftools-orange:<tag>

(see `hmftools-orange/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hmftools-orange/README.html)