recipe hmmer

Biosequence analysis using profile hidden Markov models

Homepage

http://hmmer.org/

License

BSD

Recipe

/hmmer/meta.yaml

package hmmer

Versions

3.3.1-0,  3.3-1,  3.3-0,  3.2.1-2,  3.2.1-1,  3.2.1-0,  3.2-3,  3.2-2,  3.2-0, 

3.3.1-0,  3.3-1,  3.3-0,  3.2.1-2,  3.2.1-1,  3.2.1-0,  3.2-3,  3.2-2,  3.2-0,  3.1b2-3,  3.1b2-2,  3.1b2-1,  3.1b2-0,  3.0-0,  2.3.2-4,  2.3.2-3,  2.3.2-2,  2.3.2-1,  2.3.2-0

Depends

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

Required By

• pipelign

• picrust2

• treesapp

• deltabs

• sepp

• ncbi-amrfinderplus

• barrnap

• run-dbcan

• dfast

• checkv

• pipits

• platon

• dfast_qc

• perl-bio-automatedannotation

• busco

• fargene

• isescan

• singlem

• mitos

• dammit

• metaxa

• bakta

• enrichm

• islandpath

• maxbin2

• magpurify

• pfam_scan

• seqscreen

• anvio

• tesorter

• deepbgc

• metachip

• gtdbtk

• fgmp

• prokka

• phigaro

• trinotate

• kofamscan

• antismash

• vibrant

• bttoxin_scanner

• itsx

• thapbi-pict

• checkm-genome

• integron_finder

• itsxpress

• bttoxin_digger

• eukcc

• megagta

• pychopper

• genometreetk

• repeatmasker

• metawatt

• funannotate

• plant_tribes_gene_family_classifier

• dram

• plant_tribes_assembly_post_processor

• anarci

• bttcmp

• bioconductor-methtargetedngs

• dfam

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hmmer

and update with:

conda update hmmer

or use the docker container:

docker pull quay.io/biocontainers/hmmer:<tag>

(see hmmer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hmmer/README.html)