recipe hmmer

Biosequence analysis using profile hidden Markov models

Homepage

http://hmmer.org/

License

BSD

Recipe

/hmmer/meta.yaml

package hmmer

Versions

3.3.2-2,  3.3.2-1,  3.3.2-0,  3.3.1-0,  3.3-1,  3.3-0,  3.2.1-2,  3.2.1-1,  3.2.1-0, 

3.3.2-2,  3.3.2-1,  3.3.2-0,  3.3.1-0,  3.3-1,  3.3-0,  3.2.1-2,  3.2.1-1,  3.2.1-0,  3.2-3,  3.2-2,  3.2-0,  3.1b2-3,  3.1b2-2,  3.1b2-1,  3.1b2-0,  3.0-2,  3.0-1,  3.0-0,  2.3.2-6,  2.3.2-5,  2.3.2-4,  2.3.2-3,  2.3.2-2,  2.3.2-1,  2.3.2-0

Depends

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

Required By

• pfam_scan

• parallel-meta-suite

• maxbin2

• autometa

• plant_tribes_assembly_post_processor

• metabinner

• bttcmp

• dammit

• dfast

• emeraldbgc

• dvorfs

• deltabs

• bakta

• iqkm

• perl-bio-automatedannotation

• phispy

• dram

• metawatt

• fargene

• checkv

• rodeo

• genometreetk

• bigscape

• integron_finder

• itsxpress

• busco

• scalop

• get_homologues

• antismash

• pychopper

• picrust2

• pifcosm

• gtdbtk

• metacerberus

• kofamscan

• pipits

• repeatmasker

• viralverify

• mitos

• dfast_qc

• tritimap

• hafez

• eggnog-mapper

• deepbgc

• semibin

• icescreen

• run-dbcan

• abritamr

• bttoxin_digger

• ncbi-amrfinderplus

• mantis_pfa

• fgmp

• platon

• bioconductor-methtargetedngs

• seqscreen

• dfam

• trinotate

• anarci

• interproscan

• islandpath

• tesorter

• treesapp

• mirnature

• megagta

• isescan

• prokka

• singlem

• metachip

• phigaro

• mdmcleaner

• itsx

• agrvate

• eukcc

• mitoz

• barrnap

• funannotate

• plant_tribes_gene_family_classifier

• metaxa

• checkm-genome

• vadr

• vibrant

• pipelign

• antismash-lite

• magpurify

• biophi

• enrichm

• bttoxin_scanner

• sepp

• anvio

• fegenie

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hmmer

and update with:

conda update hmmer

or use the docker container:

docker pull quay.io/biocontainers/hmmer:<tag>

(see hmmer/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hmmer/README.html)