recipe hmmer

Biosequence analysis using profile hidden Markov models

Homepage

http://hmmer.org/

License

BSD

Recipe

/hmmer/meta.yaml

package hmmer

Versions

3.3.1-0,  3.3-1,  3.3-0,  3.2.1-2,  3.2.1-1,  3.2.1-0,  3.2-3,  3.2-2,  3.2-0, 

3.3.1-0,  3.3-1,  3.3-0,  3.2.1-2,  3.2.1-1,  3.2.1-0,  3.2-3,  3.2-2,  3.2-0,  3.1b2-3,  3.1b2-2,  3.1b2-1,  3.1b2-0,  3.0-0,  2.3.2-4,  2.3.2-3,  2.3.2-2,  2.3.2-1,  2.3.2-0

Depends

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

Required By

• pfam_scan

• plant_tribes_gene_family_classifier

• metaxa

• islandpath

• perl-bio-automatedannotation

• deepbgc

• enrichm

• tesorter

• dfast_qc

• isescan

• gtdbtk

• plant_tribes_assembly_post_processor

• busco

• anarci

• dram

• checkm-genome

• dfast

• trinotate

• vibrant

• integron_finder

• metawatt

• kofamscan

• magpurify

• seqscreen

• dfam

• checkv

• anvio

• antismash

• megagta

• pipits

• treesapp

• platon

• phigaro

• bioconductor-methtargetedngs

• mitos

• prokka

• thapbi-pict

• itsx

• picrust2

• fargene

• sepp

• funannotate

• repeatmasker

• pipelign

• eukcc

• bttcmp

• bttoxin_scanner

• singlem

• ncbi-amrfinderplus

• genometreetk

• fgmp

• maxbin2

• pychopper

• deltabs

• bttoxin_digger

• itsxpress

• barrnap

• dammit

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hmmer

and update with:

conda update hmmer

or use the docker container:

docker pull quay.io/biocontainers/hmmer:<tag>

(see hmmer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hmmer/README.html)