recipe hmmer

Biosequence analysis using profile hidden Markov models

Homepage

http://hmmer.org/

License

BSD

Recipe

/hmmer/meta.yaml

package hmmer

Versions

3.3.2-1,  3.3.2-0,  3.3.1-0,  3.3-1,  3.3-0,  3.2.1-2,  3.2.1-1,  3.2.1-0,  3.2-3, 

3.3.2-1,  3.3.2-0,  3.3.1-0,  3.3-1,  3.3-0,  3.2.1-2,  3.2.1-1,  3.2.1-0,  3.2-3,  3.2-2,  3.2-0,  3.1b2-3,  3.1b2-2,  3.1b2-1,  3.1b2-0,  3.0-1,  3.0-0,  2.3.2-5,  2.3.2-4,  2.3.2-3,  2.3.2-2,  2.3.2-1,  2.3.2-0

Depends

• libgcc-ng >=9.3.0

• libstdcxx-ng >=9.3.0

Required By

• vadr

• bakta

• barrnap

• dfam

• picrust2

• metabinner

• metaxa

• scalop

• dfast_qc

• rodeo

• vibrant

• deltabs

• enrichm

• genometreetk

• dfast

• bttcmp

• fargene

• dram

• eukcc

• funannotate

• megagta

• emeraldbgc

• run-dbcan

• sepp

• viralverify

• anvio

• metawatt

• iqkm

• prokka

• antismash

• seqscreen

• deepbgc

• bttoxin_digger

• anarci

• pychopper

• ncbi-amrfinderplus

• bioconductor-methtargetedngs

• phigaro

• abritamr

• checkm-genome

• metachip

• mitos

• pfam_scan

• tritimap

• kofamscan

• busco

• gtdbtk

• maxbin2

• mirnature

• checkv

• plant_tribes_gene_family_classifier

• plant_tribes_assembly_post_processor

• eggnog-mapper

• agrvate

• pipits

• platon

• singlem

• magpurify

• pipelign

• integron_finder

• bttoxin_scanner

• treesapp

• semibin

• tesorter

• dvorfs

• islandpath

• perl-bio-automatedannotation

• fegenie

• fgmp

• repeatmasker

• itsxpress

• itsx

• trinotate

• dammit

• isescan

• phispy

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install hmmer

and update with:

conda update hmmer

or use the docker container:

docker pull quay.io/biocontainers/hmmer:<tag>

(see hmmer/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/hmmer/README.html)