recipe hocort

HoCoRT - Host Contamination Removal Tool

Homepage:

https://github.com/ignasrum/hocort

License:

MIT / MIT

Recipe:

/hocort/meta.yaml

package hocort

Versions:

1.0.0-0,  0.3.3-0,  0.3.2-0

Depends:

• bbmap

• bowtie2

• bwa-mem2

• hisat2

• kraken2 >=2.1.2

• minimap2

• python >=3.7,<3.10

• samtools >=1.8

• tbb 2020.2.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install hocort

and update with:

conda update hocort

or use the docker container:

docker pull quay.io/biocontainers/hocort:<tag>

(see hocort/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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