recipe hormon

A tool for annotation of alpha satellite arrays in centromeres of a newly assembled human genome.

Homepage:

https://github.com/ablab/HORmon

License:

GPL / GPLv2

Recipe:

/hormon/meta.yaml

HORmon infer human monomers based on the given alpha-satellite consensus template and centromeric sequence, extract HORs and decompose centromeric sequence into HORs.

package hormon

(downloads) docker_hormon

versions:

1.0.0-0

depends biopython:

depends clustalo:

depends joblib:

depends networkx:

depends pygraphviz:

depends python:

>=3.6

depends python-edlib:

depends setuptools:

depends stringdecomposer:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hormon

and update with::

   mamba update hormon

To create a new environment, run:

mamba create --name myenvname hormon

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hormon:<tag>

(see `hormon/tags`_ for valid values for ``<tag>``)

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Link to this page

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