recipe how_are_we_stranded_here

Python package for testing strandedness of RNA-Seq fastq files

Homepage:

https://github.com/betsig/how_are_we_stranded_here

License:

MIT / MIT

Recipe:

/how_are_we_stranded_here/meta.yaml

package how_are_we_stranded_here

(downloads) docker_how_are_we_stranded_here

versions:

1.0.1-0

depends kallisto:

0.44.0.*

depends numpy:

depends pandas:

depends python:

depends rseqc:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install how_are_we_stranded_here

and update with::

   mamba update how_are_we_stranded_here

To create a new environment, run:

mamba create --name myenvname how_are_we_stranded_here

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/how_are_we_stranded_here:<tag>

(see `how_are_we_stranded_here/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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