- recipe hubward-all
Meta-package for hubward including bedtools and UCSC tools
- Homepage:
- License:
The license for this meta-package is MIT; individual tools vary
- Recipe:
- package hubward-all¶
- Versions:
0.2.1-3,0.2.1-2,0.2.1-1,0.2.1-0- Depends:
on bedtools
on crossmap
on hubward
on ucsc-bedgraphtobigwig
on ucsc-bedtobigbed
on ucsc-bigbedtobed
on ucsc-bigwigtobedgraph
on ucsc-bigwigtowig
on ucsc-fetchchromsizes
on ucsc-liftover
on ucsc-wigtobigwig
- Additional platforms:
Installation¶
You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).
Pixi¶
With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:
pixi global install hubward-all
to add into an existing workspace instead, run:
pixi add hubward-all
In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:
pixi workspace channel add conda-forge
pixi workspace channel add bioconda
Conda¶
With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:
conda install hubward-all
Alternatively, to install into a new environment, run:
conda create -n envname hubward-all
with envname being the name of the desired environment.
Container¶
Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:
docker pull quay.io/biocontainers/hubward-all:<tag>
(see hubward-all/tags for valid values for <tag>).
Integrated deployment¶
Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/hubward-all/README.html)
