- recipe hybpiper
HybPiper is a suite of Python scripts/modules for targeted sequence capture.
- Homepage:
- Documentation:
- License:
GPL3 / GPL-3.0-or-later
- Recipe:
- package hybpiper¶
- versions:
2.3.1-0,2.3.0-1,2.3.0-0,2.2.0-1,2.2.0-0,2.1.8-0,2.1.7-0,2.1.6-0,2.1.5-0,2.3.1-0,2.3.0-1,2.3.0-0,2.2.0-1,2.2.0-0,2.1.8-0,2.1.7-0,2.1.6-0,2.1.5-0,2.1.3-1,2.1.3-0,2.1.1-0- depends bbmap:
>=38.44- depends biopython:
>=1.80- depends blast:
>=2.9.0- depends bwa:
>=0.7.17- depends diamond:
>=2.0.11- depends exonerate:
>=2.4.0- depends mafft:
>=7.487- depends matplotlib-base:
>=3.3.2- depends numpy:
- depends parallel:
>=20211022- depends pebble:
>=4.6.3- depends progressbar2:
>=3.38.0- depends psutil:
>=5.9.0- depends python:
- depends samtools:
>=1.14- depends seaborn-base:
>=0.11.1- depends spades:
>=4.0.0- depends trimmomatic:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install hybpiper and update with:: mamba update hybpiper
To create a new environment, run:
mamba create --name myenvname hybpiper
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/hybpiper:<tag> (see `hybpiper/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/hybpiper/README.html)
