recipe hybran

Hybrid reference transfer and ab initio prokaryotic genome annotation


Developer docs:





package hybran

(downloads) docker_hybran



depends biopython:


depends blast:

depends cd-hit:

depends diamond:

depends dill:

depends eggnog-mapper:

depends emboss:

depends entrez-direct:

depends mcl:

depends multiprocess:

depends prokka:


depends python:


depends ratt:

depends tbl2asn-forever:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hybran

and update with::

   mamba update hybran

To create a new environment, run:

mamba create --name myenvname hybran

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `hybran/tags`_ for valid values for ``<tag>``)

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