recipe hylight

Strain aware assembly of low coverage metagenomes.

Homepage:

https://github.com/LuoGroup2023/HyLight

License:

MIT / MIT

Recipe:

/hylight/meta.yaml

package hylight

versions:

1.0.0-0

depends bfc:

r181

depends boost-cpp:

1.82

depends fmlrc2:

0.1.7

depends libgcc:

>=12

depends libstdcxx:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends minimap2:

2.26

depends numpy:

1.19.5

depends pandas:

1.1.5

depends python:

>=3.6,<3.7.0a0

depends python_abi:

3.6.* *_cp36m

depends racon:

1.5.0

depends ropebwt2:

r187

depends scipy:

1.5.3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hylight

and update with::

   mamba update hylight

To create a new environment, run:

mamba create --name myenvname hylight

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hylight:<tag>

(see `hylight/tags`_ for valid values for ``<tag>``)

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