recipe hypercluster

A package for automatic clustering hyperparameter optmization

Homepage:

https://github.com/liliblu/hypercluster

Documentation:

https://hypercluster.readthedocs.io/en/latest/

License:

MIT / MIT

Recipe:

/hypercluster/meta.yaml

package hypercluster

versions:

0.1.13-0,  0.1.12-0,  0.1.10-0,  0.1.9-0,  0.1.8-0,  0.1.3-1,  0.1.3-0,  0.1.2-0,  0.0.2-0

depends hdbscan:

>=0.8.24

depends igraph:

>=0.7.1

depends leidenalg:

>=0.7.0

depends louvain:

>=0.6.1

depends matplotlib:

>=3.1.0

depends numpy:

>=1.16.4

depends pandas:

>=0.24.2

depends scikit-learn:

>=0.22.0

depends scipy:

>=1.2.1

depends seaborn:

>=0.9.0

depends snakemake:

>=5.8.2

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install hypercluster

and update with::

   mamba update hypercluster

To create a new environment, run:

mamba create --name myenvname hypercluster

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/hypercluster:<tag>

(see `hypercluster/tags`_ for valid values for ``<tag>``)

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