recipe icount-mini

Computational pipeline for analysis of iCLIP data

Homepage:

https://github.com/ulelab/iCount-Mini

License:

MIT / MIT

Recipe:

/icount-mini/meta.yaml

package icount-mini

versions:

3.0.1-0,  3.0.0-0,  2.0.3-0

depends bedtools:

2.30.0

depends cutadapt:

>=1.10

depends matplotlib-base:

depends numpy:

depends numpydoc:

depends pandas:

depends pybedtools:

depends pysam:

depends python:

depends sphinx:

>=1.4

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install icount-mini

and update with::

   mamba update icount-mini

To create a new environment, run:

mamba create --name myenvname icount-mini

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/icount-mini:<tag>

(see `icount-mini/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/icount-mini/README.html)