recipe idemux

A Lexogen tool for demultiplexing and index error correcting fastq files. Works with Lexogen i7, i5 and i1 barcodes.

Homepage:

https://github.com/lexogen-tools/idemux

License:

OTHER / custom

Recipe:

/idemux/meta.yaml

package idemux

(downloads) docker_idemux

versions:

0.1.6-0,  0.1.5-0,  0.1.2-0

depends dataclasses:

depends importlib_resources:

depends python:

>=3.6

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install idemux

and update with::

   mamba update idemux

To create a new environment, run:

mamba create --name myenvname idemux

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/idemux:<tag>

(see `idemux/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/idemux/README.html)