recipe idr-py

Helper methods for accessing the Image Data Resource (IDR)

Homepage:

https://github.com/IDR/idr-py

Documentation:

https://idr.openmicroscopy.org/about/api.html

License:

GPL2 / GPL-2.0+

Recipe:

/idr-py/meta.yaml

.. image:: https://travis-ci.org/IDR/idr-py.svg?branch=master

:target: https://travis-ci.org/IDR/idr-py

IDR-PY ======

Library with helper methods for accessing the Image Data Resource (IDR).

Requirements ============

* OMERO.py 5.6.x * Python 3

Installing from PyPI ====================

This section assumes that an OMERO.web is already installed.

Install the app using `pip <https://pip.pypa.io/en/stable/>`_:

::

$ pip install -U idr-py

License -------

This project, similar to many Open Microscopy Environment (OME) projects, is licensed under the terms of the GNU General Public License (GPL) v2 or later.

Copyright ---------

2017-2020, The Open Microscopy Environment

package idr-py

(downloads) docker_idr-py

versions:

0.4.2-0,  0.4.0-0,  0.4.0.dev3-0,  0.3.0-1,  0.3.0-0,  0.2.1-0,  0.2.0-0

depends ipython:

depends ipywidgets:

depends matplotlib-base:

depends pandas:

depends python:

>=3

depends python-omero:

depends requests:

depends seaborn:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install idr-py

and update with::

   mamba update idr-py

To create a new environment, run:

mamba create --name myenvname idr-py

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/idr-py:<tag>

(see `idr-py/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/idr-py/README.html)