recipe idr

The IDR (Irreproducible Discovery Rate) framework is a unified approach to measure the reproducibility of findings identified from replicate experiments and provide highly stable thresholds based on reproducibility.

Homepage:

https://github.com/kundajelab/idr

License:

GPL / GPLv2

Recipe:

/idr/meta.yaml

Links:

doi: 10.1214/11-AOAS466

package idr

(downloads) docker_idr

versions:
2.0.4.2-12,  2.0.4.2-11,  2.0.4.2-10,  2.0.4.2-9,  2.0.4.2-8,  2.0.4.2-7,  2.0.4.2-6,  2.0.4.2-5,  2.0.4.2-4, 

2.0.4.2-12,  2.0.4.2-11,  2.0.4.2-10,  2.0.4.2-9,  2.0.4.2-8,  2.0.4.2-7,  2.0.4.2-6,  2.0.4.2-5,  2.0.4.2-4,  2.0.4.2-3,  2.0.4.2-2,  2.0.4.2-1,  2.0.4.2-0,  2.0.3-5,  2.0.3-4,  2.0.3-3,  2.0.3-2,  2.0.3-0,  2.0.2-0

depends libgcc-ng:

>=12

depends matplotlib-base:

depends numpy:

<1.20

depends numpy:

>=1.19.5,<2.0a0

depends python:

>=3.9,<3.10.0a0

depends python_abi:

3.9.* *_cp39

depends scipy:

<1.10

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install idr

and update with::

   mamba update idr

To create a new environment, run:

mamba create --name myenvname idr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/idr:<tag>

(see `idr/tags`_ for valid values for ``<tag>``)

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Link to this page

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