recipe ig-flowtools

set of tools for flow cytometry analysis

Homepage:

https://github.com/ImmPortDB/ig-flowtools

License:

BSD / BSD License

Recipe:

/ig-flowtools/meta.yaml

package ig-flowtools

versions:

2.0.2-5,  2.0.2-4,  2.0.2-3,  2.0.2-2,  2.0.2-1,  2.0.2-0,  2.0.1-0,  2.0.0-0,  1.4.1-1, 

2.0.2-5,  2.0.2-4,  2.0.2-3,  2.0.2-2,  2.0.2-1,  2.0.2-0,  2.0.1-0,  2.0.0-0,  1.4.1-1,  1.4.1-0,  1.4.0-0,  1.3.0-0,  1.0.0-0

depends bioconductor-flowai:

depends bioconductor-flowcl:

depends bioconductor-flowcore:

depends bioconductor-flowdensity:

depends bioconductor-flowsom:

depends bioconductor-flowviz:

depends bioconductor-ggcyto:

depends clustergrammer:

depends flock:

depends jinja2:

depends matplotlib-base:

depends numpy:

depends pandas:

depends python:

depends r-base:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ig-flowtools

and update with::

   mamba update ig-flowtools

To create a new environment, run:

mamba create --name myenvname ig-flowtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ig-flowtools:<tag>

(see `ig-flowtools/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ig-flowtools/README.html)