recipe igblast

A tool for analyzing immunoglobulin (IG) and T cell receptor (TR) sequences

Homepage:

http://www.ncbi.nlm.nih.gov/projects/igblast/

License:

Public Domain and others

Recipe:

/igblast/meta.yaml

Links:

biotools: igblast

package igblast

(downloads) docker_igblast

versions:
1.22.0-1,  1.22.0-0,  1.21.0-1,  1.21.0-0,  1.20.0-0,  1.19.0-0,  1.17.1-1,  1.17.1-0,  1.15.0-0, 

1.22.0-1,  1.22.0-0,  1.21.0-1,  1.21.0-0,  1.20.0-0,  1.19.0-0,  1.17.1-1,  1.17.1-0,  1.15.0-0,  1.10.0-1,  1.10.0-0,  1.9.0-0,  1.7.0-1,  1.7.0-0,  1.5.0-2,  1.5.0-1,  1.4.0-6,  1.4.0-5,  1.4.0-4,  1.4.0-2,  1.4.0-1,  1.4.0-0

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc-ng:

>=12

depends libsqlite:

>=3.45.3,<4.0a0

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends ncbi-vdb:

>=2.9.6

depends ncbi-vdb:

>=3.1.1,<4.0a0

depends perl:

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install igblast

and update with::

   mamba update igblast

To create a new environment, run:

mamba create --name myenvname igblast

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/igblast:<tag>

(see `igblast/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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